PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g013710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 302aa    MW: 33914.3 Da    PI: 7.1299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g013710.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09146193455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopen02g013710.1 146 SHSLAERARREKISKKMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 193
                       8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.04E-9140197No hitNo description
SuperFamilySSF474596.41E-17140211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-18142210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.11142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-7146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-9148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLQMSVLERQ RAVLERIYNH SKQQLSSLVP QQELAHLITG CVQGNFNMFG GGDSNFVNFQ  60
EMARPSFSTI SNSSITTVSP PPEKESSMIA PRENVVSTKK RKAEFSEEED CEKSPGNDSK  120
ENSKTSEVQK PDYIHVRARR GQATDSHSLA ERARREKISK KMKYLQDLVP GCNKVTGKAG  180
MLDEIINYVQ SLQKQVEFLS MKLATLNPRL DLNTDNIFVK DFPSYMTTTF PPTVAIPTLS  240
EYNIIQHQQA GSTGDVAQML PQRRDLMSFP DTYLGSSHVT VVQPQQPTFE PDLQSLFSVG  300
FN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063422.10.0PREDICTED: transcription factor HBI1
SwissprotQ9ZPW32e-55HBI1_ARATH; Transcription factor HBI1
TrEMBLK4B6F70.0K4B6F7_SOLLC; Uncharacterized protein
STRINGSolyc02g062690.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.22e-56bHLH family protein